Matrixyl
Molecular Profile
Compound
Matrixyl
Also known as
palmitoyl pentapeptide-4 (INCI name)
CAS number
214047-00-4
Molecular formula
C39H75N7O10
Molecular weight
802.05 g/mol
Purity
greater than 99 percent
Physical form
Lyophilized powder
Synthesis route
Solid-phase peptide synthesis
What Matrixyl is, structurally
Matrixyl is a lipopeptide: a short peptide carrying a long fatty acyl chain on its N-terminus. That combination, rather than the peptide part alone, determines how it behaves.
The sequence is not recorded in the product database, so the observations here derive from the formula, which is unusually informative. Thirty-nine carbons is far more than a five-residue peptide accounts for, and a hydrogen-to-carbon ratio near two is characteristic of saturated aliphatic chain rather than peptide backbone. Seven nitrogens indicates two nitrogen-bearing side chains beyond the backbone amides.
Read together, those numbers describe a molecule with a substantial saturated hydrocarbon tail attached to a small, polar, basic peptide head. That is the structure of a surfactant, and it is the single most useful thing to know when handling it.
Two consequences follow. The molecule is amphiphilic, so it orients at interfaces and can self-associate into aggregates above a threshold concentration. And its solubility is governed by the balance between its two halves, so it should not be assumed to dissolve like a peptide of comparable mass.
The N-terminus is acylated rather than free, which removes both the N-terminal positive charge and, usefully, the diketopiperazine route that affects short peptides with a free amine. There is no cysteine, no methionine and no aromatic residue anywhere in the molecule.
Reconstitution and handling
Sterile water is a reasonable first choice but may not suffice, and this is the compound in this batch most likely to resist straightforward aqueous reconstitution. Where solubility proves limiting, the conventional approach for an amphiphile is gentle warming and patience rather than harder agitation, or a small proportion of a water-miscible co-solvent. Confirm compatibility with the downstream use first.
Add diluent down the vial wall, swirl gently, and give it time to clarify. Do not vortex, and watch for foaming: a surfactant-like molecule stabilises foam readily, and material trapped in foam is material not in solution.
Adsorption is a genuine concern rather than a formality. An amphiphile binds surfaces by its hydrophobic tail, so losses to plasticware and to the air-liquid interface are both plausible at low concentration. Low-protein-binding tubes help; fewer transfer steps help more.
This is laboratory preparation chemistry, not dosing, administration, or protocol guidance of any kind.
Storage and stability
Store the lyophilized solid at -20 degrees C, sealed, desiccated and protected from light, and let a cold vial warm before opening. Reconstituted, hold at 2 to 8 degrees C, or aliquot and freeze rather than thawing repeatedly.
The chemical degradation profile is narrow. No cysteine or methionine means no oxidation at sulfur, no asparagine or glutamine means no deamidation, no aspartate means no isomerisation, and the acylated N-terminus closes off diketopiperazine formation. The palmitoyl group attaches through an amide bond rather than an ester, so it does not hydrolyse readily.
The realistic failure mode is physical rather than chemical. Amphiphiles aggregate, concentration-dependently and not always reversibly. A solution that was clear when prepared and is hazy later has probably not degraded chemically, and a mass spectrum would say so while the vial remained unusable.
These are storage conditions for the material, not dosing or administration guidance.
How Matrixyl is tested
Reversed-phase HPLC establishes chromatographic purity as area percent, detected in the low UV near 214 nm, since the formula indicates no aromatic residue and therefore no absorbance at 280 nm.
Retention is where this diverges sharply from the short peptides here. The palmitoyl chain is strongly retained on C18, so it elutes late and needs a substantially higher organic proportion than a peptide method uses. A gradient built for hydrophilic peptides may not elute it within the run at all.
Area percent is a chromatographic measure rather than peptide content by weight. Solid-phase synthesis delivers a salt, commonly trifluoroacetate or acetate, and the two basic side chains indicated by the nitrogen count are the sites it associates with.
Mass spectrometry confirms identity against the expected weight. The impurity class most worth resolving is the non-acylated peptide, that is, material where the palmitoyl group never attached. It is 238 mass units lighter and, being far more polar, elutes very much earlier, so chromatography separates it easily once the method is set up to look.
These describe general methodology, not a claim about any particular batch.
Handling FAQ
Why does this behave differently from other peptides of similar mass? Because most of its mass is not peptide. A sixteen-carbon saturated chain on a five-residue head makes it an amphiphile rather than a peptide, so it aggregates, adsorbs and retains on a column like a surfactant.
A stored solution has gone slightly hazy. Is it degraded? Not necessarily in a chemical sense. Amphiphiles aggregate, and that is a physical change a mass spectrum will not show. Haze points to aggregation rather than to a broken molecule, and it is not reliably reversed by warming.
Full specifications for Matrixyl.
Palmitoyl Pentapeptide-4 (Pal-KTTKS) is available as a research compound, HPLC-verified with a batch-specific COA.
Certificate of Analysis
Batch DF/MAT/062026 · 99.498% purity by HPLC · certified Aug 2026
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